PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.002G016500.1
Common NameB456_002G016500, LOC105773984
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 232aa    MW: 25685.3 Da    PI: 7.1465
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.002G016500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.43.4e-1078121854
                         HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         rE+ RRdr+N++f eL  +l +    +  K +K++iL  Av+ +++L
  Gorai.002G016500.1  78 REKLRRDRLNDRFLELGAVLEPE---RPMKADKVAILSDAVRMVRQL 121
                         9*********************9...99*****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.25270121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-1376143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-776127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-1377143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.92E-878126No hitNo description
PfamPF000101.6E-778121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MELDPSENSN WLLDYGIPDF PPPAAAFAWP CQSTLNAPSN VSATVDCSFA DSDCLKDVVS  60
RKRLKSESCG GSGSKAWREK LRRDRLNDRF LELGAVLEPE RPMKADKVAI LSDAVRMVRQ  120
LRSEAQRLKD SNEELQAKIK ELKEEKNELR DEKQRLKADK EQLEQQVKAM SAQPGFLTQP  180
PSISAALAAQ RQAAGNKLMP VIGFPSLAMW QFMPPAAVDT SQDHVLRPPV A*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012451711.11e-168PREDICTED: transcription factor ILR3-like
SwissprotQ9FH373e-91ILR3_ARATH; Transcription factor ILR3
TrEMBLA0A0D2QYW61e-168A0A0D2QYW6_G
STRINGVIT_12s0059g02650.t011e-113(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14372890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G54680.13e-72bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]